PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG098600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 431aa    MW: 43138.7 Da    PI: 6.319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG098600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.5e-12212257555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.3NG098600.1.p 212 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 257
                          99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.11E-13205261No hitNo description
SuperFamilySSF474599.29E-17205266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-16209266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9212257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MQPSGREMAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG TKSPWELSEG AEDAAVQAAF  60
GDDSSALLVS RLRQHQIGGD VKSPSSSSPV MLQLSDLHRH GGGLAGAGAE ESAGFSPLPL  120
FTDRSAPARE EMEGGFRSPN SAQGGDHSLF NGFGMHGAAA VQPQFGQGGG SVSPQSLGGP  180
AVSGGATTPA GGAAPPRQVR QRARRGQATD PHSIAERLRR ERIAERMKSL QELVPNANKT  240
DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAGLAPLVAS MSSEANSNGG GSNSGGGGAK  300
GSAATKANGS GGGENGGLRV AENQVAKMME EDMGTAMQYL QGKGLCLMPI SLASAISSAT  360
SSTSLLSRPP PVLRHPAASA SPAPPGQLHD GSNGFAAANA ATSPASASSA GGGGDDPRST  420
KDAVCGGGKQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620762e-60BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279382e-60KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964663.10.0PREDICTED: transcription factor bHLH82
SwissprotQ9ZUG99e-73BH066_ARATH; Transcription factor bHLH66
TrEMBLI1H0C61e-154I1H0C6_BRADI; Uncharacterized protein
STRINGBRADI1G47350.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-33LJRHL1-like 2